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dc.contributor.authorMendes, Bruno Henrique de Medeiros-
dc.date.accessioned2024-09-27T11:50:17Z-
dc.date.available2024-09-27T11:50:17Z-
dc.date.issued2023-12-22-
dc.identifier.citationMendes, H. M. Bruno. Uma nova abordagem na busca de inibidores de metaloproteases de matriz (mmp): estudos de semicarbazonas e tiossemicarbazonas via modelagem molecular. 2023. 192 f. Dissertação (Mestrado em Química) - Instituto de Ciências Exatas, Universidade Federal Rural do Rio de Janeiro, Seropédica, 2023.pt_BR
dc.identifier.urihttps://rima.ufrrj.br/jspui/handle/20.500.14407/18265-
dc.description.abstractAlvos moleculares promissores para a busca de novos fármacos para doenças como dengue hemorrágica, câncer, doenças cardiovasculares e inflamações são as metaloproteases de matriz (MMPs), com destaque para a MMP-9, por esta desempenhar papel central em processos hemorrágicos e inflamatórios e estar frequentemente superexpressa nessas patologias. Como existem diferentes classes de MMPs, uma questão central no desenvolvimento de inibidores dessas enzimas é a busca por seletividade. Este projeto tem como objetivo analisar por métodos teóricos a seletividade de semicarbazonas (SC) e tiossemicarbazonas (TSC), anteriormente planejadas e sintetizadas por nosso grupo, em relação à MMP-9, visando o planejamento de novos candidatos a inibidores seletivos para essa enzima. Além disso, o estudo busca analisar por métodos teóricos as propriedades farmacocinéticas dos compostos mais seletivos para determinar sua potencial viabilidade para administração humana. Estudos de docagem molecular foram feitos com as estruturas da MMP-9 (PDB 6ESM) e da MMP-1 (PDB 1HFC), com a função Goldscore. Os complexos com as melhores poses foram selecionados e submetidos à otimização geométrica via cálculos semiempíricos com o método PM7, adotando a proteína de forma integral e em um meio contínuo representando o solvente, para determinação da entalpia de interação dos compostos. Os resultados evidenciam que os ligantes do grupo TSC, em geral, apresentam um perfil de seletividade teórico promissor com a MMP-9 humana, destacando-se o ligante 23b, que foi usado como base para uma nova série de ligantes mais seletivos. Essa abordagem resultou em dados relevantes sobre o perfil de interação das TSC com os sítios S1’ das enzimas MMP-1 e MMP-9, explorados no planejamento racional visando a seletividade. Os ligantes da série BH mostraram-se potencialmente seletivos, com destaque para a molécula BH02a, que apresentou melhor desempenho de interação e seletividade pela MMP-9 do que 23b. As modificações se mostraram benéficas para as propriedades ADMET previstas. A série BH equilibra solubilidade e penetração de membrana, com melhorias na absorção prevista das TSC, apesar de BH02a e BH02b apresentarem absorção ligeiramente reduzida devido à alta polaridade. Resultados teóricos de biodisponibilidade indicam potencial para fármacos orais, sem alertas PAINS. Com ampla distribuição sistêmica prevista, especialmente os mais lipofílicos da série BH, eles apresentam potencial de particionamento em regiões lipídicas como a matriz extracelular. As TSC foram previstas como inibidoras de CYP1A2, com BH01a também inibindo CYP2C19, mas modificações propostas reduziram o perfil teórico de inibição de CYP3A4. Todos os compostos têm baixo T1/2 e depuração renal previstos, sugerindo administração mais frequente, e não há potencial cardiotoxicidade. A molécula BH01a mostra genotoxicidade prevista, e há uma tendência geral à hepatotoxicidade, sendo 25, BH01 e BH01a previstos como menos hepatotóxicos. As TSC atendem à faixa teórica da dose diária máxima da FDA, indicando administração segura, e compostos 23b, 23c, 25 e série BH têm baixa toxicidade aguda prevista, sendo BH01b, BH02, BH02a e BH02b os menos tóxicos.pt_BR
dc.description.sponsorshipCoordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPESpt_BR
dc.languageporpt_BR
dc.publisherUniversidade Federal Rural do Rio de Janeiropt_BR
dc.subjectModelagem Molecularpt_BR
dc.subjectMMP-9pt_BR
dc.subjectFarmacodinâmicapt_BR
dc.subjectFarmacocinéticapt_BR
dc.subjectMolecular Modelingpt_BR
dc.subjectPharmacodynamicspt_BR
dc.subjectPharmacokineticspt_BR
dc.titleUma nova abordagem na busca de inibidores de metaloproteases de matriz (MMP): estudos de semicarbazonas e tiossemicarbazonas via modelagem molecularpt_BR
dc.title.alternativeA new approach in the search for matrix metalloproteinase (MMP) inhibitors: studies on semicarbazones and thiosemicarbazones via molecular modelingen
dc.typeDissertaçãopt_BR
dc.description.abstractOtherPromising molecular targets for the search for new drugs for diseases such as dengue hemorrhagic fever, cancer, cardiovascular diseases and inflammation are matrix metalloproteases (MMPs), with emphasis on MMP-9, as it plays a central role in hemorrhagic and inflammatory processes and is frequently overexpressed in these pathologies. As there are different classes of MMPs, a central issue in the development of inhibitors of these enzymes is the search for selectivity. This project aims to analyze, using theoretical methods, the selectivity of semicarbazones (SC) and thiosemicarbazones (TSC), previously designed and synthesized by our group, in relation to MMP-9, aiming to design new candidates for selective inhibitors for this enzyme. Furthermore, the study seeks to analyze the pharmacokinetic properties of the most selective compounds using theoretical methods to determine their potential viability for human administration. Molecular docking studies were carried out with the structures of MMP-9 (PDB 6ESM) and MMP-1 (PDB 1HFC), with the Goldscore function. The complexes with the best poses were selected and subjected to geometric optimization via semi-empirical calculations with the PM7 method, adopting the protein in its entirety and in a continuous medium representing the solvent, to determine the interaction enthalpy of the compounds. The results show that ligands from the TSC group, in general, present a promising theoretical selectivity profile with human MMP-9, highlighting ligand 23b, which was used as the basis for a new series of more selective ligands. This approach resulted in relevant data on the interaction profile of TSC with the S1' sites of the MMP-1 and MMP- 9 enzymes, explored in rational planning aiming at selectivity. The BH series ligands proved to be potentially selective, with emphasis on the BH02a molecule, which showed better interaction performance and selectivity for MMP-9 than 23b. The modifications were found to be beneficial for the predicted ADMET properties.The BH series balances solubility and membrane penetration, with improvements in the predicted TSC absorption, although BH02a and BH02b show slightly reduced absorption due to high polarity. Theoretical biodisponibility results indicate potential for oral drugs without PAINS alerts. With broad predicted systemic distribution, especially the more lipophilic compounds in the BH series, they show potential for partitioning into lipid-rich regions such as the extracellular matrix. TSC were predicted as CYP1A2 inhibitors, with BH01a also inhibiting CYP2C19, suggesting potential drug interactions, but proposed modifications reduced the theoretical inhibition profile of CYP3A4. All compounds have low predicted T1/2 and renal clearance, suggesting more frequent administration, and show no potential cardiotoxicity. BH01a exhibits predicted genotoxicity, and there is a general tendency toward hepatotoxicity, with 25, BH01, and BH01a predicted as less hepatotoxic. TSC meet the theoretical range of the FDA's maximum daily dose, indicating safe administration, and compounds 23b, 23c, 25, and the BH series have low predicted acute toxicity, with BH01b, BH02, BH02a, and BH02b being the least toxic.en
dc.contributor.advisor1Sant'Anna, Carlos Mauricio Rabello de-
dc.contributor.advisor1IDhttps://orcid.org/0000-0003-1989-5038pt_BR
dc.contributor.advisor1Latteshttp://lattes.cnpq.br/2087099684752643pt_BR
dc.contributor.referee1Sant'Anna, Carlos Mauricio Rabello de-
dc.contributor.referee1IDhttps://orcid.org/0000-0003-1989-5038pt_BR
dc.contributor.referee1Latteshttp://lattes.cnpq.br/2087099684752643pt_BR
dc.contributor.referee2Lacerda, Renata Barbosa-
dc.contributor.referee2IDhttps://orcid.org/0000-0002-6185-3408pt_BR
dc.contributor.referee2Latteshttp://lattes.cnpq.br/2068820144272983pt_BR
dc.contributor.referee3Albuquerque, Magaly Girão-
dc.contributor.referee3Latteshttp://lattes.cnpq.br/0780841238637304pt_BR
dc.creator.Latteshttp://lattes.cnpq.br/1539771701945764pt_BR
dc.publisher.countryBrasilpt_BR
dc.publisher.departmentInstituto de Químicapt_BR
dc.publisher.initialsUFRRJpt_BR
dc.publisher.programPrograma de Pós-Graduação em Químicapt_BR
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