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dc.contributor.authorMello, Ericson Ramos de-
dc.date.accessioned2024-10-04T14:47:23Z-
dc.date.available2024-10-04T14:47:23Z-
dc.date.issued2023-06-26-
dc.identifier.citationMELLO, Ericson Ramos de. Identificação molecular de coccídios de aves silvestres: aplicabilidade de algumas regiões gênicas mitocondriais na diferenciação de espécies e análise filogenética. 2023. 235 f. Tese (Doutorado em Ciências, Ciências Veterinárias) - Instituto de Veterinária, Universidade Federal Rural do Rio de Janeiro, Seropédica, 2023.pt_BR
dc.identifier.urihttps://rima.ufrrj.br/jspui/handle/20.500.14407/18513-
dc.description.abstractOs coccídios são protozoários intracelulares obrigatórios que infectam a maioria dos invertebrados, todas as classes dos vertebrados, incluindo os animais domésticos, silvestres e seres humanos. Apresentam ciclos de vida intestinais, embora sejam observados, em algumas espécies, estágios de vida extra-intestinais. São geralmente identificados a partir de amostras fecais. O Brasil apresenta uma diversa avifauna representada atualmente por 1.971 espécies de diferentes ordens, dentre as quais destacam-se os Passeriformes, ordem mais representativa que é frequentemente positiva para diferentes espécies de coccídios parasitas, principalmente dos gêneros Isospora Schneider, 1881 e Eimeria Schneider, 1875. O estudo das interações entre esses parasitos e hospedeiros nos permite entender diversos processos ecológicos, evolutivos e comportamentais, incluindo seleção sexual, sucesso reprodutivo, migração, competitividade, dentre outras. Atualmente, existem diversas técnicas e metodologias que podem ser aplicadas para identificação de uma espécie coccidiana além da análise morfológica, desde a confirmação da suscetibilidade do hospedeiro, determinação da densidade parasitária, grau de patogenicidade e identificação de diferenças inter e intra-específicas que fornecem ajustes taxonômicos relevantes. Finalmente, o advento da Biologia Molecular, prática reconhecida e estabelecida, principalmente no estudo de parasitas coccidianos dos animais de produção, oferece informações complementares as de microscopia e métodos imunológicos, por exemplo, pois o sequenciamento do DNA do microrganismo, serve como estudo adicional para a taxonomia e filogenia. Baseando-se nestes fatos, este trabalho, nos capítulos I, II, III e IV teve por objetivos, identificar geneticamente coccídios parasitas de aves silvestres capturadas em regiões de Mata Atlântica do Sudeste brasileiro, demonstrando o isolamento de oocistos de coccídios de amostras fecais de aves silvestres, com posterior extração de DNA a fim de amplificar e sequenciar diferentes regiões gênicas dos genes cox1, cox3 e fragmentos da subunidade pequena e grande do rDNA do DNA mitocondrial, avaliando a aplicabilidade destas novas sequências na diferenciação de espécies e estudos filogenéticos.pt_BR
dc.description.sponsorshipCoordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPESpt_BR
dc.languageporpt_BR
dc.publisherUniversidade Federal Rural do Rio de Janeiropt_BR
dc.subjectbiologia molecularpt_BR
dc.subjectcoccídiospt_BR
dc.subjectCOIpt_BR
dc.subject18Spt_BR
dc.subjectIsosporapt_BR
dc.subjectmolecular biologypt_BR
dc.subjectcoccidiapt_BR
dc.subjectCOIxpt_BR
dc.titleIdentificação molecular de coccídios de aves silvestres: aplicabilidade de algumas regiões gênicas mitocondriais na diferenciação de espécies e análise filogenéticapt_BR
dc.title.alternativeMolecular identification of coccidia of wild birds: applicability of some mitochondrial gene regions in species differentiation and phylogenetic analysisen
dc.typeTesept_BR
dc.description.abstractOtherCoccidia are obligate intracellular protozoa that infect most invertebrates, all classes of vertebrates, including domestic, wild, and human animals. They have intestinal life cycles, although extra-intestinal life stages are observed in some species. They are usually identified from fecalsamples. Brazil has a diverse avifauna currently representd by 1.971 species of different orders, among which the Passeriformes stand out, a more representative order that is often positive for different species of parasitic coccidia, mainly of the genera Isospora Schneider, 1881 and Eimeria Schneider, 1875. The study of the interactions between these parasites and hosts allows us to understand several ecological, evolutionary and behavioral processes, including sexual selection, reproductive success, migration, competitiveness, among others. Currently, there are several techniques and methodologies that can be applied to the identification of a coccidian species beyond morphological analysis, from the confirmation of host susceptibility, determination of parasite density, degree of pathogenicity and identification of inter- and intra-specific differences that provide relevant taxonomic adjustments. Finally, the advent of Molecular Biology, a recognized and established practice, especially in the study of coccidian parasites of production animals, offers complementary information to that of microscopy and immunological methods, for example, because the sequencing of the DNA of the microorganism, serves as an additional study for taxonomy and phylogeny. Based on these facts, this work, in chapters I, II, III and IV, aimed to identify genetically parasitic coccidia of wild birds captured in Atlantic Forest regions of Southeastern Brazil, demonstrating the isolation of coccidia oocysts from fecal samples of wild birds, with subsequent DNA extraction in order to amplify and sequence different gene regions of cox1, cox3 and fragments of the small and large rDNA subunit of mitochondrial DNA genes, evaluating the applicability of these new sequences in species differentiation and phylogenetic studies.en
dc.contributor.advisor1Berto, Bruno Pereira-
dc.contributor.advisor1IDhttps://orcid.org/0000-0002-1072-5254pt_BR
dc.contributor.advisor1Latteshttp://lattes.cnpq.br/6463344507508582pt_BR
dc.contributor.advisor-co1Lima, Viviane Moreira de-
dc.contributor.advisor-co1Latteshttp://lattes.cnpq.br/9519411446795300pt_BR
dc.contributor.referee1Berto, Bruno Pereira-
dc.contributor.referee1IDhttps://orcid.org/0000-0002-1072-5254pt_BR
dc.contributor.referee1Latteshttp://lattes.cnpq.br/6463344507508582pt_BR
dc.contributor.referee2Oliveira, Mariana de Souza-
dc.contributor.referee2IDhttps://orcid.org/0000-0001-9594-0633pt_BR
dc.contributor.referee2Latteshttp://lattes.cnpq.br/1596249156068499pt_BR
dc.contributor.referee3Santos-Clapp, Michelle Daniele dos-
dc.contributor.referee3Latteshttp://lattes.cnpq.br/4056181485200783pt_BR
dc.contributor.referee4Cardozo, Sergian Vianna-
dc.contributor.referee4IDhttps://orcid.org/0000-0003-2990-7936pt_BR
dc.contributor.referee4Latteshttp://lattes.cnpq.br/6363164575596950pt_BR
dc.contributor.referee5Dias, Lúcio André Viana-
dc.contributor.referee5IDhttps://orcid.org/0000-0002-0932-0479pt_BR
dc.contributor.referee5Latteshttp://lattes.cnpq.br/5038105812515471pt_BR
dc.creator.IDhttps://orcid.org/0000-0002-7350-0562pt_BR
dc.creator.Latteshttp://lattes.cnpq.br/7586101257131791pt_BR
dc.publisher.countryBrasilpt_BR
dc.publisher.departmentInstituto de Veterináriapt_BR
dc.publisher.initialsUFRRJpt_BR
dc.publisher.programPrograma de Pós-Graduação em Ciências Veterináriaspt_BR
dc.relation.referencesADRIANO E. A, THYSSEN P. J., CORDEIRO N. S. Eimeria curvata (Apicomplexa: Eimeriidae) in Columbina talpacoti and Scardafella squammata (Aves: Columbidae) from Brazil. Memórias do Instituto Oswaldo Cruz, 95:53–55, 2000. ADRIANO E. A., THYSSEN P. J., CORDEIRO N. S. A new species of Eimeria from the eared dove Zenaida auriculata (Aves: Columbidae) in Brazil. Acta Protozoologica, 42:71–73, 2003. ALYOUSIF M. S., AL-SHAWA Y. R., AL-ASIRI S. S. Eimeria livialis sp. n. (Apicomplexa: Eimeriidae) from the domestic pigeon, Columba livia domestica in Saudi Arabia. Journal of the Egyptian Society of Parasitology, 39:383–388, 2009. AMORIM D. S. Fundamentos de Sistemática Filogenética. Holos Editora: Ribeirão Preto, 2002. AYRES M., AYRES M., AYRES D. L., SANTOS A. A. S. BioStat aplicações estatísticas nas áreas de Ciências Biomédicas. Mamirauá: Belém, 2007. ATKINSON C. T., THOMAS N.J., HUNTER D. B. Parasitic diseases of wild birds. Wiley- Blackwell, Singapore, 2008. BALL S. J., DASZAK P., SWINNERTON K. R., JONES C. G., SNOW K.R. A new species of Eimeria (Apicomplexa:Eimeriidae) from the endangered pink pigeon, Nesoenas mayeri (Prévost, 1843) Cheke, 2005 (Columbiformes) in Mauritius. African Zoology 47:369–372, 2012. BANDYOPADHYAY P. K., BHAKTA J. N., SHUKLA R. A new Eimeria species (Protozoa: Apicomplexa: Sporozoea) from the blue rock pigeon Columba livia (Aves: Columbidae). Zoos Print Journal 21:2386–2387, 2006. BERTO B. P., FLAUSINO W., ALMEIDA C. R. R, LOPES C. W. G Polymorphism of Tyzzeria parvula (Kotlán, 1933) Klimes, 1963 (Apicomplexa: Eimeriidae) oocysts from the greylag geese, Anser anser L., 1758 from two distinct sites. Revista Brasileira de Medicina Veterinária, 30:215–219, 2008. BERTO B. P., FLAUSINO W., MCINTOSH D., TEIXEIRA-FILHO W. L., LOPES C. W. G. Coccidia of New World passerine birds (Aves: Passeriformes): a review of Eimeria Schneider, 1875 and Isospora Schneider, 1881 (Apicomplexa: Eimeriidae). Systematic Parasitology 80:159–204. https://doi.org/10.1007/s11230-011-9317-8, 2011. BERTO B. P., MCINTOSH D., LOPES C. W. G Studies on coccidian oocysts (Apicomplexa: Eucoccidiorida). Revista Brasileira de Parasitologia, Vet 23:1–15, 2014. BERTO B. P., LOPES C. W. G. Coccidia of wild birds as ecological biomarkers: Some approaches on parasite-host-environment interaction. Journal Parasitology, 106:707–713, 2020. 109 BIRDLIFE INTERNATIONAL Species factsheet: Patagioenas plumbea. http://www.birdlife.org. Accessed 14 April, 2023. BERTO B. P., MACHADO E. L., HOSSOTANI C. M. D. S., BERETTA B. M. S, SILVA D. R. R, NAKAMURA A. A., MEIRELES M. V. Integrative taxonomy for the traditional coccidians (Chromista: Miozoa: Eimeriidae) from island canaries (Aves: Passeriformes: Fringillidae): Worldwide distribution, morphological and molecular characterization, revaluations and establishment of junior synonyms. Systematic Parasitology, 2023. CASAS M. C., DUSZYNSKI D. W., ZALLES L. M. Three new eimerians in capybara (Hydrochaeris hydrochaeris) populations from Eastern Bolivia and Southern Venezuela. Journal Parasitology 81:247–251, 1995. CHATTERJEE D. K., RAY H. N. Eimeria kapotei, from the domestic pigeon, Columba livia intermedia. Proc 24th, Indian Science Congress, 56:512, 1969. DAYRAT, B. Towards integrative taxonomy. Biological Journal of the Linnean Society, 85:407–415. https://doi.org/10.1111/j.1095-8312.2005.00503.x, 2005. DOLNIK O. V. The relative stability of chronic Isospora sylvianthina (Protozoa: Apicomplexa) infection in blackcaps (Sylvia atricapilla): evaluation of a simplified method of estimating isosporan infection intensity in passerine birds. Parasitology Research, 100:155–160. https://doi.org/10.1007/s00436-006-0253-5, 2006. DOLNIK O. V., PALINAUSKAS V., BENSCH S. Individual oocysts of Isospora (Apicomplexa: Coccidia) parasites from avian feces: from photo to sequence. Journal Parasitology, 95:169–174. https://doi.org/10.1645/GE-1873.1, 2009. DUSZYNSKI D.W. Increase in size of Eimeria separata oocysts during patency. Journal Parasitology, 57:948–952. https://doi.org/10.2307/3277841, 1971. DUSZYNSKI D. W., WILBER P. G. A guideline for the preparation of species descriptions in the Eimeriidae. Journal Parasitology, 83:333–336, 1997. DUSZYNSKI D. W. Biodiversity of the Coccidia (Apicomplexa: Conoidasida) in vertebrates: what we know, what we do not know, and what needs to be done. Folia parasitological, 68:001, 2021. FAYER R. Epidemiology of protozoan infections: the coccidia. Veterinary Parasitology, 6:75–103, 1980. FLAUSINO G., LOPES C. W. G, TEIXEIRA-FILLHO W. L., FURTADO T. T., MCINTOSH D, BERTO B. P. Phenotypic and genotypic characterization of Eimeria caviae from guinea pigs (Cavia porcellus). Acta Protozoologica, 53:269–276, 2014. FUJITA M. K., LEACHÉ A. D., BURBRINK F. T., MCGUIRE J. A., MORITZ C. Coalescentbased species delimitation in an integrative taxonomy. Trends in Ecology & Evolution, 27:480–488, 2012. 110 GARDNER S. L., DUSZYNSKI D. W. Polymorphism of eimerian oocysts can be a problem in naturally infected hosts: an exemple from subterranean rodents in Bolivia. Journal Parasitology, 76:805–811, 1990. GOLEMANSKY V. (1976) Three new coccidian species (Coccidia: Eimeriidae) found in wild birds from Bulgaria. Acta Protozoologica, 15: 399–404, 1976. GOMEZ F. M., NAVARRETE I., RODRIGUEZ R. L. Influence of environmental factors on different populations of Isospora lacazei Labbe 1893 (Protozoa: Apicomplexa). Revista Iberolatinoamericana de parasitología, 42:185–196, 1982. GREIF G., STEPHAN B., HABERKORN A. Intraspecific polymorphisms of Eimeria species due to resistance against anticoccidial drugs. Parasitology Research, 82:706–714, 1996. HAFEEZ M. A., STÁSIAK I., DELNATTE P., EL-SHERRY S., SMITH D. A., BARTA J. R. Description of two new Isospora species causing visceral coccidiosis in captive superb glossy starlings, Lamprotornis superbus (Aves: Sturnidae). Parasitology Research, 113:3287–3297, 2014. HOBERG E. P., AGOSTA S. J., BOEGER W. A., BROOKS D. R. (2015) An integrated parasitology: revealing the elephant through tradition and invention. Trends in Parasitology, 31:128–133, 2015. ICMBIO. Parque Nacional do Itatiaia. http://www.icmbio.gov.br/parnaitatiaia. Accessed 14 April 2023. ICZN International Commission on Zoological Nomenclature: Amendment of Articles 8, 9, 10, 21 and 78 of the International Code of Zoological Nomenclature to expand and refine methods of publication. Bulletin Zoological Nomenclature, 69:161–169, 2012. JAMRIŠKA J., MODRÝ D. A new species of Eimeria Schneider, 1875 (Apicomplexa: Eimeriidae) from the common wood pigeon Columba palumbus Linnaeus, 1758 (Aves: Columbidae). Acta Protozoologica, 51:329–333, 2012. KUMAR S., STECHER G, LI. M., KNYAZ C., TAMURA K. MEGA X: molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35:1547–1549, 2018. MCQUISTION T. E. Eimeria palumbi, a new coccidian parasite (Apicomplexa: Eimeriidae) from the Galapagos dove (Zenaida galapagoensis). Transactions of the American Microscopical Society, 110:178–181, 1991. OLIVEIRA M. S., GENOVEZ-OLIVEIRA J. L., ORTÚZAR-FERREIRA C. N., MARONEZI C., THODE-FILHO S., CARDOZO, S. V., OLIVEIRA A. A., LIMA V. M., BERTO B. P. Eimeria ferreirai (Chromista: Miozoa: Eimeriidae) from doves Leptotila spp. (Columbiformes: Columbidae) from Brazil. Zootaxa 4821:148–160, 2020. OLIVEIRA M. S., RAMILO D.W., MELLO E. R., CARDOZO S. V., CAETANO I., BRAZIO E., FONSECA I. P., OLIVEIRA A. A., LIMA V. M., BERTO B. P. Supplementary morphological data and molecular analyses of Eimeria labbeana (Labbé, 1896) Pinto, 1928 111 (Chromista: Miozoa: Eimeriidae) from columbiform birds in Portugal. Parasitology Research, 120:3569–3580, 2021. ORTÚZAR-FERREIRA C. N., OLIVEIRA M. S., GENOVEZ-OLIVEIRA J. L., FRANCO H. A., THODE-FILHO S., OLIVEIRA A. A., LIMA V. M., FERREIRA I., BERTO B. P. Coccidia of Columbiformes of the World: A taxonomic review of its Eimeriidae species and Eimeria columbinae from Columbina talpacoti (Temminck, 1809) from Brazil. Parasitology Research, 119:329–333, 2020. MELLO D. J. M, MELLO G. J. M, MALLET-RODRIGUES F., LIMA L.M. Aves do Sudeste do Brasil: Guia de identificação. Editoração Irmãos Mello, Rio de Janeiro, 2020. MITRA A. N, DAS-GUPTA M. On a species of Eimeria (Coccidia–Sporozoa) from the intestine of a pigeon, Columba intermedia. Proc 24th, Indian Science Congress, 24:291, 1937. NORTON C. C., JOYNER L. P. Eimeria acervulina and E. mivati: oocysts, life-cycle and ability to develop in the chiken embryo. Parasitology 83:269–279, 1981. NIESCHULZ O. Ueber Kokzidien der Haustauben. Zentralbl Bakteriol Mikrobiol Hyg 134:390–393, 1935. OGEDENGBE J. D., HANNER R. H., BARTA J. R. DNA barcoding identifies Eimeria species and contributes to the phylogenetics of coccidian parasites (Eimeriorina, Apicomplexa, Alveolata). International Journal Parasitology 41:843–850, 2011. ORTÚZAR-FERREIRA C. N., ANDRADE L. A. S., GENOVEZ-OLIVEIRA J. L., OLIVEIRA M. S., MELLO E. R., CARDOZO S. V., OLIVEIRA Á. A., LIMA V. M., FERREIRA I., BERTO B. P. Molecular identification of Isospora coerebae Berto, Flausino, Luz, Ferreira; Lopes, 2010 (Chromista: Miozoa: Eimeriidae) from the bananaquit Coereba flaveola (Linnaeus, 1758) (Passeriformes: Thraupidae: Coerebinae) from Brazil. Zootaxa, 5168, 83–91, 2022. PARKER B. B., DUSZYNSKI D. W. Polymorphism of eimerian oocysts: a dilemma posed by working with some naturally infected hosts. Journal Parasitology, 72:602–604, 1986. PIGLIUCCI M. Phenotypic Plasticity: Beyond Nature and Nurture. The Johns Hopkins University Press, Baltimore, 2001. PINTO C. Synonymie de quelques especes du genre Eimeria (Eimeridia, Sporozoa). C. R. Seances Society Biology 98:564–1565, 1928. RAY D. K. On a new coccidium, Eimeria sphenocercae, from Sphenocercus sphenurus (Kokla Green pigeon). Journal Parasitology, 38:546–547, 1952. RIDGELY R. S., GWYNNE J. A., TUDOR G., ARGEL M. Aves do Brasil: Mata Atlântica do Sudeste. Horizonte, São Paulo, 2015. RONQUIST F., TESLENKO M., VAN DER MARK P., AYRES D. L., DARLING A., HÖHNA S., LARGET B., LIU L., SUCHARD M. A., HUELSENBECK J. P. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Parasitology, 61:539–542, 2012. 112 SAMPAIO I. B. M. Estatística aplicada à experimentação animal. FEP MVZ Editora, Belo Horizonte, 2002. SICK H. Ornitologia Brasileira. Nova Fronteira, Rio de Janeiro, 1997. SILVA-CARVALHO L. M, GENOVEZ-OLIVEIRA J. L., OLIVEIRA M. S., OLIVEIRA Á. A., LIMA V. M., FERREIRA I., BERTO B. P. Polymorphism and genetic diversity of Isospora parnaitatiaiensis Silva, Rodrigues, Lopes, Berto, Luz, Ferreira & Lopes, 2015 (Eimeriidae) from antbirds (Thamnophilidae) in Brazil. Systematic Parasitology, 2020. SILVA, RODRIGUES, LOPES, BERTO, LUZ, FERREIRA; LOPES, (Eimeriidae) from antbirds (Thamnophilidae) in Brazil. Systematic Parasitology, 97:847–855, 2015. TARODA A., BARROS L. D., SEIXAS M., CARDIM S. T., SASSE J. P., MINUTTI A. P., VIDOTTO O., GARCIA J. L. First molecular detection of Eimeria spp. in eared doves (Zenaida auriculata) from Brazil. Semina: Ciências Agrárias 41:1259–1266, 2020. TAYLOR M. A., COOP R. L., WALL R. L. Parasitologia Veterinária. Guanabara Koogan, Rio de Janeiro, 2017. VARGHESE T. Eimeria waiganiensis sp. n. from the greenwinged ground dove (Chalcophaps indica Linnaeus) and the magnificente Ground pigeon (Otidiphaps nobilis Gould) in Papua New Guinea. Journal Parasitology, 64:312–314 https://doi.org/10.2307/3279680, 1978. VARGHESE T. Coccidian parasites of birds of the avian order Columbiformes with a description of two new species of Eimeria. Parasitology 80:183–187, 1980. WIENS J. J. Polymorphism in Systematics and Comparative Biology. Annual Review of Ecology and Systematics, 30:327–362, 1999. WILLIAMS R. B., THEBO P., MARSHALL R. N., MARSHALL J. A. Coccidian oöcysts as type–specimens: long–termstorage in aqueous potassium dichromate solution preserves DNA. Systematic Parasitology, 76:69–76, 2010. YABSLEY M. J., BAILEY K., ADAMS H. C. A New Species of Eimeria (Apicomplexa: Eimeriidae) from the Mourning Dove, Zenaida macroura (Columbiformes: Columbidae). Comparative Parasitology, 82:231–234, 2015. YANG R., BRICE B., ELLIOT A., RYAN U. Morphological and molecular characterization of Eimeria labbeana-like (Apicomplexa:Eimeriidae) in a domestic pigeon (Columba livia domestica, Gmelin, 1789) in Australia. Experimental Parasitology, 166:124–130. http://dx.doi.org/10.1016/j.exppara.2016.04.009, 2016. YANG R., BRICE B., BERTO B. P., RYAN U. M. Morphological and genetic characterization of Eimeria chalcoptereae (Apicomplexa: Eimeriidae) in a common bronzewing pigeon (Phaps chalcoptera) (Latham, 1790) in Western Australia. Parasitology Research, 119:3729–3737. https://doi.org/10.1007/s00436-020-06844-8, 2020.pt_BR
dc.subject.cnpqParasitologiapt_BR
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